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In non-degenerate two-photon excitation (ND-TPE), electronic transition of fluorophores happens via absorption of two photons with different energies. This contrasts with conventional - or degenerate - two-photon excitation (D-TPE), where two photons with identical energies are absorbed. ND-TPE can improve performance of two-photon microscopy by extending the excitation wavelength range, reducing out-of-focus excitation, and increasing resolution and penetration depth. However, a systematic study of fluorophore performance under ND-TPE is missing, which is critical for the selection of optimal excitation wavelength combinations. It is a well-known fact that degenerate two-photon absorption spectra often deviate from theoretical predictions based on one-photon absorption spectra. Therefore, it is not clear whether non-degenerate two-photon absorption spectra are predictable from the corresponding degenerate spectra. Using our sensitive fluorescence-based spectroscopy technique, we measured non-degenerate two-photon absorption cross-sections (ND-TPACS) of several commonly used fluorophores and generated 2-dimensional ND-TPACS maps. We observed that the shape of the measured ND-TPACS spectra follows the spectra of the degenerate two-photon absorption cross-sections (D-TPACS). However, ND-TPACS are higher in magnitude, which is predicted by the “resonant enhancement” phenomenon. Therefore, we show that ND-TPACS spectra are predictable from the corresponding degenerate D-TPACS spectra under consideration of resonant enhancement. Predictability of ND-TPACS spectra is an important finding that helps choosing the optimal combination of wavelengths for ND-TPE of a given fluorophore without prior experimental measurement of ND-TPACS.
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