CONFERENCE PROCEEDINGS
Advanced Search
Home > Proceedings > Volume 11230 > Article
Presentation
9 March 2020 Deep learning enables high-throughput early detection and classification of bacterial colonies using time-lapse coherent imaging (Conference Presentation)
Hongda Wang, Hatice C. Koydemir, Yunzhe Qiu, Bijie Bai, Yibo Zhang, Yiyin Jin, Sabiha Tok, Enis C. Yilmaz, Esin Gumustekin, Yilin Luo, Yair Rivenson, Aydogan Ozcan
Author Affiliations +
Proceedings Volume 11230, Optics and Biophotonics in Low-Resource Settings VI; 112300E (2020) https://doi.org/10.1117/12.2547399
Event: SPIE BiOS, 2020, San Francisco, California, United States
Abstract
We report a highly-sensitive, high-throughput, and cost-effective bacteria identification system which continuously captures and reconstructs holographic images of an agar-plate and analyzes the time-lapsed images with deep learning models for early detection of colonies. The performance of our system was confirmed by detection and classification of Escherichia coli, Enterobacter aerogenes, and Klebsiella pneumoniae in water samples. We detected 90% of the bacterial colonies and their growth within 7-10h (>95% within 12h) with ~100% precision, and correctly identified the corresponding species within 7.6-12h with 80% accuracy, and achieved time savings of >12h as compared to the gold-standard EPA-approved methods.
Conference Presentation
© (2020) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
Citation Download Citation
Hongda Wang, Hatice C. Koydemir, Yunzhe Qiu, Bijie Bai, Yibo Zhang, Yiyin Jin, Sabiha Tok, Enis C. Yilmaz, Esin Gumustekin, Yilin Luo, Yair Rivenson, and Aydogan Ozcan "Deep learning enables high-throughput early detection and classification of bacterial colonies using time-lapse coherent imaging (Conference Presentation)", Proc. SPIE 11230, Optics and Biophotonics in Low-Resource Settings VI, 112300E (9 March 2020); https://doi.org/10.1117/12.2547399
ACCESS THE FULL ARTICLE
ORGANIZATIONAL
Sign in with credentials provided by your organization.
INSTITUTIONAL
Select your institution to access the SPIE Digital Library.
SELECT YOUR INSTITUTION
PERSONAL
Sign in with your SPIE account to access your personal subscriptions or to use specific features such as save to my library, sign up for alerts, save searches, etc.
PERSONAL SIGN IN
No SPIE Account? Create one
PURCHASE THIS CONTENT
SUBSCRIBE TO DIGITAL LIBRARY
50 downloads per 1-year subscription
Members: $195
Non-members: $335 ADD TO CART
25 downloads per 1 - year subscription
Members: $145
Non-members: $250 ADD TO CART
PURCHASE SINGLE ARTICLE
Includes PDF, HTML & Video, when available
Members: $17.00
Non-members: $21.00 ADD TO CART
PROCEEDINGS
 PRESENTATION
WATCH
PRESENTATION SAVE TO MY LIBRARY
GET CITATION
Advertisement
Advertisement
KEYWORDS
Coherence imaging
Bacteria
Classification systems
3D image reconstruction
Computing systems
Drug discovery
Gold
RELATED CONTENT
Subscribe to Digital Library
Receive Erratum Email Alert
Back to Top