Processing of GB-speckles using of Matlab parallel computing toolbox: discrimination between the nucleotide sequence of the omp1 gene for different strains of Chlamydia trachomatis

Onega Ulianova; Mariya Khizhnyakova; Sergey Zaytsev; Alexander Ulyanov; Yury Saltykov; Sergey Ulyanov; Irina Grashkina; Valentina Feodorova

doi:10.1117/12.2563402

9 April 2020 Processing of GB-speckles using of Matlab parallel computing toolbox: discrimination between the nucleotide sequence of the omp1 gene for different strains of Chlamydia trachomatis

Onega Ulianova, Mariya Khizhnyakova, Sergey Zaytsev, Alexander Ulyanov, Yury Saltykov, Sergey Ulyanov, Irina Grashkina, Valentina Feodorova

Author Affiliations +

Proceedings Volume 11457, Saratov Fall Meeting 2019: Optical and Nano-Technologies for Biology and Medicine; 114571U (2020) https://doi.org/10.1117/12.2563402
Event: Saratov Fall Meeting 2019: VII International Symposium on Optics and Biophotonics, 2019, Saratov, Russian Federation

Abstract

Chlamydia trachomatis biodiversity has been detected in clinical urogenital samples of Chlamydia patients in the Southeastern European Region of Russia. In this paper three absolutely new nucleotide sequences of “Saratov” strains (Saratov E1/61.8-B1, Saratov E2/61.46-L38, Saratov E6/61.35-B1) have been described and transformed into the form of GB-speckles. It has been demonstrated that identification of single polymorphism in nucleotide sequences can be easily performed on the base of GB-speckles. Procedure of detection of polymorphism can be made essentially faster in the case of using of Matlab Parallel Computing Toolbox.

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Onega Ulianova, Mariya Khizhnyakova, Sergey Zaytsev, Alexander Ulyanov, Yury Saltykov, Sergey Ulyanov, Irina Grashkina, and Valentina Feodorova "Processing of GB-speckles using of Matlab parallel computing toolbox: discrimination between the nucleotide sequence of the omp1 gene for different strains of Chlamydia trachomatis", Proc. SPIE 11457, Saratov Fall Meeting 2019: Optical and Nano-Technologies for Biology and Medicine, 114571U (9 April 2020); https://doi.org/10.1117/12.2563402

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