Using statistical properties of GB-speckles coding the nucleotide sequences of the 'housekeeping' genes of Listeria monocytogenes for characterization of differences between ST7 and ST106 of the clonal complex СС7

Onega Ulianova; Sergey Zaytsev; Alexander Ulyanov; Yury Saltykov; Sergey Ulyanov; Valentina Feodorova

doi:10.1117/12.2563627

9 April 2020 Using statistical properties of GB-speckles coding the nucleotide sequences of the 'housekeeping' genes of Listeria monocytogenes for characterization of differences between ST7 and ST106 of the clonal complex СС7

Onega Ulianova, Sergey Zaytsev, Alexander Ulyanov, Yury Saltykov, Sergey Ulyanov, Valentina Feodorova

Author Affiliations +

Proceedings Volume 11457, Saratov Fall Meeting 2019: Optical and Nano-Technologies for Biology and Medicine; 114571V (2020) https://doi.org/10.1117/12.2563627
Event: Saratov Fall Meeting 2019: VII International Symposium on Optics and Biophotonics, 2019, Saratov, Russian Federation

Abstract

Gene-based speckles (GB-speckles) have been implied for interpretation of the nucleotide sequences of the seven “housekeeping genes” of Listeria monocytogenes (LM). The 1st order statistics and correlation functions of 2D speckle structures corresponding to the several concatenated nucleotide sequences of two different sequence types (STs) of LM bacteria have been analyzed. Two nucleotide sequences, namely ST7 and ST106 (the clonal complex СС7) have been compared using the related GB-speckles. Differences in the GB-speckle-structures, corresponding to two different LM STs are evidently demonstrated.

Citation Download Citation

Onega Ulianova, Sergey Zaytsev, Alexander Ulyanov, Yury Saltykov, Sergey Ulyanov, and Valentina Feodorova "Using statistical properties of GB-speckles coding the nucleotide sequences of the 'housekeeping' genes of Listeria monocytogenes for characterization of differences between ST7 and ST106 of the clonal complex СС7", Proc. SPIE 11457, Saratov Fall Meeting 2019: Optical and Nano-Technologies for Biology and Medicine, 114571V (9 April 2020); https://doi.org/10.1117/12.2563627

ACCESS THE FULL ARTICLE

INSTITUTIONAL
Select your institution to access the SPIE Digital Library.

SELECT YOUR INSTITUTION

PERSONAL
Sign in with your SPIE account to access your personal subscriptions or to use specific features such as save to my library, sign up for alerts, save searches, etc.

PERSONAL SIGN IN

No SPIE Account? Create one

PURCHASE THIS CONTENT

SUBSCRIBE TO DIGITAL LIBRARY

50 downloads per 1-year subscription

Members: $195

Non-members: $335 ADD TO CART

25 downloads per 1 - year subscription

Members: $145

Non-members: $250 ADD TO CART

PURCHASE SINGLE ARTICLE

Includes PDF, HTML & Video, when available